Syed Murtuza Baker

icon indicating a website link https://www.research.manchester.ac.uk/portal/syed.murtuzabaker.html icon indicating an email [email protected]

icon company The University of Manchester icon location Manchester icon location Single cell data scientist and a Machine Learning enthusiastic.

Results 4 issues of Syed Murtuza Baker

findDAR is giving NA error

3 comment

When I am running `findDAR` it gives me Error: NA counts not allowed. The command I used are ` DARs = findDAR( obj=x.sp.filt, input.mat="pmat", cluster.pos=5, #cluster.neg=2, cluster.neg.method="knn", test.method="exactTest", bcv=0.4, #0.4...

Error in `createSnap`

4 comment

Hello, When I try to create a snap object with the following command ``` x.sp = createSnap( file=c("RJ_ATACseq_from_cellranger.snap"), sample=c("Pancreas_190724"), num.cores=1 ) ``` it gives me the following error ``` Error...

run10x multiple sample

11 comment

Hello, When I run run10x command on the 10X samples aggregated using cellranger aggr function, run10x gives me an error. Traceback (most recent call last): File "../anaconda3/bin/velocyto", line 11, in...

spg.calculate_adj_matrix is making all Nan with our own FFPE histology image

1 comment

Hello, Thank you for making SpaGCN available to community. When I am trying SpaGCN with my own FFPE histology images on a 10X Visum data, the spg.calculate_adj_matrix is producing all...