Fynn Bachmann

Hi Pavlin, Thanks, with the newest version 0.6.0 the above example works now. What do you think caused the behaviour? UPDATE: The bug is not fixed. I just forgot the...

This is the error message I get: > Traceback (most recent call last): > File "/home/fsvbach/miniconda3/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 3080, in get_loc > return self._engine.get_loc(casted_key) > > File "pandas/_libs/index.pyx", line 70, in...

Well, it is not fixed, as I updated in the post above (I had forgotten to comment out df = df.to_numpy() in which case it always had been working). With...

Okay, with negative_gradient_method="fft" it works, but I sometimes get the RuntimeWarning: invalid value encountered in log kl_divergence_ += sum_P * np.log(sum_Q + EPSILON) A minimal example would be: ``` from...

Yes.  This is the result of openTSNE with bh setting when it doesn't crash.  This is the result of openTSNE with fft settings (where I get the above...

The points in FFT-openTSNE for example are something like ``` ... [ 1.76457933, 13.81758939], [ 2.02415051, 13.85560307], [ 1.94253379, 13.86327763], [ 2.01328632, 13.71940575], [ 2.04201515, 13.7215927 ], [ 2.17067327, 13.8131649],...