Frimpong Boadu

I am also facing the same problem, please have you been able to find the error.

Hi is there a way to set --chroms 1 2 parameter to accept more than one string. For example my data is formated as NC_037328.1 but the map function splits...

methylpy DMRfind \ --allc-files all_files/allc_ARS-UCD1_CTRL1.tsv.gz all_files/allc_ARS-UCD1_CTRL2.tsv.gz \ --samples ARS-UCD1_CTRL1 ARS-UCD1_CTRL2 \ --mc-type "CGN" \ --chroms NC_037328.1 \ --num-procs 64 \ --output-prefix DMR_CTRL1_CTRL2

I am using methylpy 1.4.3 version. The example you gave me works for me also but my input is not working. This is the exact error that I get: Splitting...

NC_037328.1,28599,+,CAG,0,1,1 NC_037328.1,34167,+,CTG,0,2,1 NC_037328.1,47181,-,CAT,0,1,1 NC_037328.1,134883,-,CAT,0,1,1 NC_037328.1,138299,-,CAT,0,2,1 NC_037328.1,138300,+,CCT,0,2,1 NC_037328.1,138301,+,CTG,0,2,1 NC_037328.1,138303,-,CAG,0,2,1 NC_037328.1,138306,-,CAT,0,2,1 NC_037328.1,138310,+,CAC,0,2,1 NC_037328.1,138312,+,CAG,0,2,1 NC_037328.1,138314,-,CTG,0,2,1 NC_037328.1,138317,+,CAA,0,2,1 NC_037328.1,138320,-,CTT,0,2,1 NC_037328.1,138322,-,CAC,0,2,1 NC_037328.1,140407,-,CTA,0,4,1 NC_037328.1,140408,-,CCT,0,4,1 NC_037328.1,140409,+,CAA,0,4,1 NC_037328.1,145179,-,CAG,0,1,1 NC_037328.1,145180,-,CCA,0,1,1 NC_037328.1,145868,-,CAA,0,3,1 NC_037328.1,146655,+,CAA,1,5,1 NC_037328.1,149309,-,CAG,0,1,1 NC_037328.1,149359,-,CAG,0,1,1 NC_037328.1,149361,-,CAC,0,1,1 NC_037328.1,149364,-,CAT,0,1,1 NC_037328.1,152099,-,CAT,0,1,1 NC_037328.1,152107,-,CTA,0,1,1 NC_037328.1,152109,-,CAC,0,1,1 NC_037328.1,153427,-,CAT,0,1,1...

Its tab separated; the split I replace the split with coma. Howvere doing a print gives this: NC_037328.1 28599 + CAG 0 1 1 NC_037328.1 34167 + CTG 0 2...