mosaicatcher-pipeline

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[Bug]: Pipeline not working on Snakemake version 8, running without internet connection

2

### Contact Details [email protected] ### What happened? I was trying to run the test pipeline, I created a new conda environment following the Usage instruction, but I am getting an...

fawaz-dabbaghieh

Bumps [actions/checkout](https://github.com/actions/checkout) from 3.2.0 to 3.5.0. Release notes Sourced from actions/checkout's releases. v3.5.0 What's Changed Add new public key for known_hosts by @​cdb in actions/checkout#1237 New Contributors @​cdb made their...

dependabot[bot]

### Contact Details [email protected] ### What happened? Ploidy issue ### Steps To Reproduce See below ### Mosaicatcher-pipeline Version 1.5.1 (Default) ### Command used ```shell -s workflow/Snakefile --config genecore=True genecore_prefix=/g/korbel/STOCKS/Data/Assay/sequencing/2024 genecore_date_folder=2024-07-24-HC7FTAFX7...

weber8thomas

Bumps [github/super-linter](https://github.com/github/super-linter) from 4 to 6. Release notes Sourced from github/super-linter's releases. v6 Full Changelog: https://github.com/github/super-linter/compare/v4.10.2...v6 Changelog Sourced from github/super-linter's changelog. 6.4.0 (2024-04-16) 🚀 Features add clang-format style configuration (#5424)...

dependabot[bot]

Bumps [github/super-linter](https://github.com/github/super-linter) from 4 to 7. Release notes Sourced from github/super-linter's releases. v7 What's Changed Upstream by @​zkoppert in github/super-linter#10 Update fork to make v7 release available (Go 1.23 compatibility)...

dependabot[bot]

[Bug]: pipeline's checkpoints seem to be malfunctioning

3

### Contact Details [email protected] ### What happened? I've been tinkering with this pipeline for a few days but I cannot get it to work. I'm fairly new to Snakemake so...

cachedpotato