pepe84

how to create the taxonlist *.csv file?

1

Hello- what NCBI taxonomic IDs go into this file? is it the GI numbers? I am a little confused here. Thanks!

Hello- Thanks for creating this awesome R package. I am still trying to understand how the run_lefse works with sub-groups. I am using the script below: _mm_lefse

biobakery_workflows --method dada2 not working, even after confirming dada2 and all other packages were properly installed

1

Can somebody help me with biobakery_workflows for 16s data? Below my script and errors: biobakery_workflows 16s --input input --output out --method dada2 --pair-identifier "_R1_" --local-jobs 2 --threads 8 Err: b'Error...

Error in if (nrow(tmpkeepfeature) > 0) { : argument is of length zero

1

Can anyone help fixing this error? Error in if (nrow(tmpkeepfeature) > 0) { : argument is of length zero I've no clue how to solve it. all my rows sum...