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Written 0 variants for all contigs

1

Hi, Really scratching my head here with my mocha input. I have the phased annotated of my unphased file and I don't get any variants written to the allelic shift...

BJWiley233

Could not parse gender (0/1/2) in the sample statistics file

2

Dear developer, I ran into this issue when running the mCA detection pipeline. If the coding for gender is 0/1/2 (in the sample statistics file), I will get the following...

uqzqiao

question about calling CNV with tumor and normal-pair sample

3

Dear developer I want to call CNV with my tumor sample(array data), and the normal-pair sample i had. When I run the MoChA pipeline, some hg19/hg39 related files was needed....

lizhan96

question with call cnv for array data

8

hi there, I have successfully run the phase pipeline. but it's seem that the Chromosomal alterations pipeline guileline was only described for the WGS data but not array data? Could...

lizhan96

Crash before/during call-gtc_tsv, difficult to interpret the error message...

1

Error message: `[2022-04-27 11:50:34,79] [info] BackgroundConfigAsyncJobExecutionActor [e38dbc61mocha.gtc_tsv:NA:1]: job id: 22366 [2022-04-27 11:50:34,79] [info] BackgroundConfigAsyncJobExecutionActor [e38dbc61mocha.gtc_tsv:NA:1]: Status change from - to Done [2022-04-27 11:50:35,16] [info] WorkflowManagerActor: Workflow e38dbc61-b064-4141-9c6a-e5d54d6dd2f3 failed (during ExecutingWorkflowState):...

Jolleboll

age_plot.R script not available

1

Hi, I can't find the age_plot.R mentionned in README. Where can I download it ? Thanks.

Emmanuel-CEPH

FYI: bio-mocha has been committed to the FreeBSD ports collection. It might be helpful to users if you could post a message like the following on your website: Thanks! bio-mocha...

outpaddling

imp5Converter Output file format is not supported

9

Hi there, I've recently encountered an issue while trying to download resources for GRCh37 while follow the installation steps. When running the imp5Converter command to convert BCF files. I encountered...

jiang53peng

eLRR: Clarifcation on LRR adjustments

6

Hi there, I was curious if you can provide details on the type of LRR adjustments that are made to produce the eLRR plots? Cheers, Ryan

ryan-ed-bailey

Can I Use CEL Files from Axiom Precision Medicine Research Array (PMRA) Release 3 to Generate CHP Files and Obtain VCF Files Annotated with GC, BAF, and LRR Content?

4

Hello, I am a beginner in the field of mosaic chromosome alterations and I'm trying to use the Mocha pipeline with original CEL files sequenced in Axiom Precision Medicine Research...

Yanranli007