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Unable to infer the A and B alleles while parsing the site...

11

I have a batch of VCF files from an array that I am trying to add ALLELE_A and ALLELE_B into to be able to run them through MoChA. I used...

AkshajD

Error [E::bgzf_read_block] Invalid BGZF header at offset 85619

1

Dear Giulio, When I run this command from the Mocha page on my data: ``` bcftools isec --no-version -Ou --complement --exclude "N_ALT>1" --write 1 $dir/$pfx.unphased.bcf $dir/$pfx.xcl.bcf | \ bcftools annotate...

IPriscilla

Use combined 1kG and HRC as reference panel for imputation

1

Hi! Is it possible to use HRC reference panel for imputation? Would it be possible for imputation to create reference panel that includes not only 1kG data but also Haplotype...

iranmdl