Segfault with cel-files not succesful.

[teepean]

Hello,

I tried a simple test with a cel but it segfaults. Am I doing it wrong or what might cause the issue?

bcftools +affy2vcf -v --csv GenomeWideSNP_6.na35.annot.csv --fasta-ref human_g1k_v37.fasta --cel GSM821004.CEL --output test.csv affy2vcf 2023-12-06 https://github.com/freeseek/gtc2vcf Reading CSV file GenomeWideSNP_6.na35.annot.csv Reading XDA CEL file /cygdrive/i/geohommeli/iso/GSM821004.CEL Writing VCF file Segmentation fault (core dumped)

[freeseek]

Segmentation fault should never happen. However, you cannot use --csv or --fasta with the option --cel. The option --cel is only to explore the content of a CEL file. BCFtools/affy2vcf will not be able to convert a CEL file to any other format. It can convert CHP files or TXT summary/report files, but you need to use Affymetrix tools to generate those from CEL files