freedomq8

Hi there, I am trying to find out what are the best settings/options/data to use with strelka to call variants of mtDNA across a number of exome samples (mapped to...

Empty PDF plots QQ & Manhattan

1

Hi, I am using the latest EPACTS and managed to solve many dependencies i.e aclocal 1.4 and gcc 5 from EPACTS google mailing list. I don't have any issue when...

Fisher exact test pvalue and multiple testing

9

Hi there, I am using the fisher exact test following the instructions on http://varianttools.sourceforge.net/Association/ExactTest . I am using it for autosomal and mitochondrial variants and wanted to know if the...

limit analysis based on selected region (bed file)

1

Hi there , I am analyzing a data that exomes from different exomes companies. is there an option inside vtools to select variant within a region of interest (for example...