Frederik Ziebell
Frederik Ziebell
It would be useful to be able to test against an interval of beta values and compute FSOS and svalues in a similar fasion to the [apeglm](https://bioconductor.org/packages/release/bioc/html/apeglm.html) package. In my...
Both purrr and furrr's `map*` functions have a `.progress` switch to enable a progress bar. It would be very convenient to also have it available, e.g. in future_lapply. Here is...
I want to run a loop in parallel on a SLURM cluster and use `progressr` to output near-live updates. Here's my setup: ### test.R ```r library("future") library("furrr") library("progressr") options(progressr.enable =...
Hi Henrik, I think this is somewhat related to #200: I noticed that row-wise computations in matrixStats are slower than column-wise one and that this effect worsens with the size...
Hi Constantin, when the number of design matrix columns increases (and thus the number of samples for a fixed number of replicates), glmGamPoi scales cubically. Consider the following code where...
Hi Mike, it would be very convenient if the `name` variable in `h5read` is not mandatory but has a default value `NULL`, in which case a list of valid dataset...
Since there is a `RenameCells()` function, it would be helpful to also have a function to rename features. The current [advice](https://github.com/satijalab/seurat/issues/2617) is to create a new assay object with renamed...
Since the original publication is called _Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model_, it would be nice to have a part of the vignette...
Hi Mike, when the count matrix contains a value larger than `.Machine$integer.max`, `DESeqDataSet()` fails because NA values are introduced when converting the matrix to integer mode. Seeing such a high...
Please get rid of the different possible UI answers that mean yes or no but are worded differently
After running `use_git()` in a new project, I'm asked if want to commit a number of files with the answers being, in my case ``` 1: Negative 2: Absolutely not...