Frédéric Mahé
Frédéric Mahé
This is low priority, as it can be easily done with a few shell commands. An option to output sequence length (in nucleotides) would be useful. It could be name...
```sh vsearch --fastx_filter /dev/null ``` The toy example above returns: ``` @s;size=1;;ee=0.0001 A + I ``` It might be cleaner to merge the annotation separators, i.e. write only one `;`...
Header length used to be limited to 2,048 characters. There is no specific limit imposed on header lengths anymore. Yet, a long header can trigger a segmentation fault on my...
Roadmap
For complete transparency, this is the roadmap I have in mind for swarm. Of course, this is completely open for discussion. > Semantic Versioning 2.0.0 > > Given a version...
[Qiime 2](http://2.qiime.org/) now offers an interface for third-party plugins. The [plugin creation](https://docs.qiime2.org/2017.2/plugins/developing/) does not seem complicated: the plugin is a python 3 wrapper presenting some or all the functionalities of...
There are seven sequences tagged as [Microsporidia](https://en.wikipedia.org/wiki/Microsporidia) in PR2 4.12: ``` GU130407 EU589246 EF990668 GQ246188 GQ258752 JQ268567 KF830273 ``` all with the following taxonomic assignment: ``` Eukaryota|Opisthokonta|Fungi|Microsporidiomycota|Microsporidiomycotina|Microsporidiomycotina_X|Microsporidia|Microsporidia_sp. ``` Using figure...
@GuilhemSempere reported that the `vsearch` Windows binaries do not accept compressed files by default and require additional `dll`s. Indeed, on a fresh and up-to-date Windows 10 install, trying to read...
As a follow-up on issue #545, here is a list of `--userfields` options available in `usearch` (see [userfields](https://drive5.com/usearch/manual/userfields.html)), but not in `vsearch`. Starting with the most important, in my opinion:...
``` gcc (GCC) 7.1.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or...