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merge annotation separators in fastq and fasta headers
vsearch --fastx_filter <(printf "@s;size=1;\nA\n+\nI\n") --eeout --fastqout - 2> /dev/null
The toy example above returns:
@s;size=1;;ee=0.0001
A
+
I
It might be cleaner to merge the annotation separators, i.e. write only one ;
instead of two? This is a very minor point.