Florin Ratajczak

For example, the R package clusterProfiler has a high-level interface that works exactly like that: https://yulab-smu.top/biomedical-knowledge-mining-book/clusterprofiler-go.html#clusterprofiler-go-ora

@szarecor I agree, the tone of my original wording was not constructive, hence I redacted it. However, I still stand by the content of the issue. I think it is...

I didn't imply anything, I directly addressed the issue that I have. It is nice that you guys figured it out, however, that doesnt mean it can't be improved. And...

Hi @mali-git , you are right, it says `CUDA out of memory. Tried to allocate 794.00 MiB (GPU 0; 10.76 GiB total capacity; 7.31 GiB already allocated; 558.19 MiB free;...

Thanks for looking into my request! > You want to score all triples of the form (Compound_i, CtD, Disease_j), where Compound_i comes from a provided list of compounds, and Disease_j...

Thanks for the detailed reply! However, I am still confused. > Thus, no triple (Compound0, CtD, Gene0) will be evaluated, as long as there is no true triple (Compound0, CtD,...

I have another question which goes in the same direction. It seems to me that we need to feed this mask of ones as edge weights into the forward pass...

I see, thanks for the explanation! I think the explanation script is really helpful and adds a lot to the repository. I have clicked through the explanation example and I...

Thanks again a ton! Does this mean in this case that I have to already train the model with explicit self-loops in place or can I just put them in...

Thanks for the response! I have tested several cuda and cpu versions and the only one that worked was If I install torch for cuda 11.6 (which is CUDA 12.0...