Francesco Cicconardi
Francesco Cicconardi
Hi, I trying to use DeepFRI on a butterfly proteome. I'm using the most recent model and I was wondering what would be the recommended threshold for the score. CHeers...
Hi, I was trying to test your software. I tried your command line for fasta file: `python predict.py --fasta_fn examples/pdb_chains.fasta -ont mf -v` But I got this? ``` 2023-09-29 12:57:17.302713:...
Hi, I'm having a problem compiling mafToFastaStitcher. I'm getting this error ``` src/mafToFastaStitcherAPI.c:655:22: error: ‘%lu’ directive writing between 1 and 19 bytes into a region of size 7 [-Werror=format-overflow=] sprintf(fmtName,...
Hi, I'm using stringtie to assemble a transcriptome using a reference annotation made with a predict annotation containing only CDS regions. This is the command line I'm using: ``` stringtie...
Hi, I'm trying to compile LJA, but I'm getting this error: ``` -- The CXX compiler identification is GNU 4.8.5 -- Check for working CXX compiler: /sw/lang/gcc-4.8.5/bin/c++ -- Check for...
Hi, I'm having some problem installing treePL. I did install the dependecies: ``` [tk19812@bp1-login01 deps]$ ls -l total 35640 drwxr-xr-x. 10 tk19812 bisc 4096 Aug 19 09:57 adol-c drwxr-xr-x. 7...
Hi, I'm getting this error when `depict_clades.R` is executed. ``` [1] "species/results" [1] "here" [1] "/user/work/tk19812/software/DiscoVista/example/1KP/species/results" [1] 0 [1] "/user/work/tk19812/software/DiscoVista/example/1KP/species/results" [1] "bootstrap is numeric" [1] "merging finished!" [1] "working on...
Hi, I'm getting this segmentation fault, and I don't know how to fix it, any help? ``` Segmentation fault exonerate --showsugar T --showtargetgff T --softmasktarget T -n 2 --model protein2genome...
[ERRORS] A helper process has finished unsuccessfully and Process pipeline: Spawner process failed.
Hi, I'm trying to use longstich with ont data on an assebly done with flye. But I'm betting this errors. I don't quite understand the nature of the errors. Thanks...
Hi @spond, I'm running the Relax scan analysis. It seems like I always have different results using the same dataset and command line, also on the example data. I wonder...