Florian M

Saw exception in Dataset.from_images called with a tif file. Stack trace: ``` Traceback (most recent call last): File "/usr/local/lib/python3.11/concurrent/futures/process.py", line 261, in _process_worker r = call_item.fn(*call_item.args, **call_item.kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "site-packages/cluster_tools/executors/multiprocessing_.py",...

Access Metadata of Segments & Trees in Annotations

4

https://github.com/scalableminds/webknossos/pull/7875 introduces metadata for segments and trees and extends the NML format to include it. The libs should allow accessing it. We should discuss what the interface should look like.

Hi @sylikc and contributors, and thanks for your excellent work maintaining jpegview! I assume that these pointer checks are designed as a guard to abort the EXIFReader in case of...

Out of heap space during volume annotation merging

1

Volume annotation merging is implemented in pure scala and holds a SegmentInteger object for each voxel of all output buckets in memory. No wonder we got OOMs when merging large...

Allow users to change their names (and admins if isWkorgInstance==false)

1

### URL of deployed dev instance (used for testing): - https://___.webknossos.xyz ### Steps to test: - abc ### TODOs: - [x] Backend - [x] re-use existing PATCH users route -...

WIP: Improve perf of applying zarr agglomerate mappings

1

### URL of deployed dev instance (used for testing): - https://___.webknossos.xyz ### Steps to test: - abc ### TODOs: - [x] compare against hdf5 on local laptop (hdf5 with cumsum...

Allow Publishing AI Models to Paths/S3

1

Introduces a new protocol for publishing and accessing AI models. Similar to datasets, a path field is added in postgres, and the uploadToPaths prefix can be selected. When using the...

Dataset Upload modal in Onboarding Flow broken. Remove?

3

Folder is not pre-selected, upload button does nothing. Also see https://scm.slack.com/archives/C5AKLAV0B/p1765787905429939

Similarly to dataset and attachment uploadToPaths, we should also track paths and support S3 publishing for AI models. Corresponds to https://github.com/scalableminds/voxelytics/issues/4341

Currently deletion on disk is skipped for remote paths that are not managed by wk via global credentials. However, there are also instances which import local datasets via explore+add, where...