Florian Zwagemaker

icon company Center for Infectious Disease Control icon location Utrecht, The Netherlands icon location I build software for analyzing viruses at the Dutch National Institute for Public Health and the Environment (RIVM) @RIVM-bioinformatics

Results 3 issues of Florian Zwagemaker

Update AmpliGone recipe for version 1.1.0

2 comment

The latest release of AmpliGone (1.1.0) has some changes in dependencies. This PR updates the bioconda recipe to match the new required dependencies ---- Please read the [guidelines for Bioconda...

Remove Krona-LCA from workflow and required databases

The Krona-LCA gives errors like https://github.com/marbl/Krona/issues/137 and https://github.com/marbl/Krona/issues/139. We also see it in our logs. Since we already have an LCA method via `MgKit`, which produces an LCA with "better"...

enhancement

Automate the detection and configuration of local and remote system resources

We can make sure there's a significant improvement in setup and configuration by automating the detection and configuration of both local and remote system resources. Available cpu can be found...

enhancement