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                                            flaviagann

Problem with the exported_pseudobulk function

Hello, @SeppeDeWinter Thanks! Yes, I checked and the names of the chromosomes present in my fragments file are in the chromsize file. I also double-checked the directories I'm using and...

Problem with the exported_pseudobulk function

Hey, @SeppeDeWinter !! Thank you for the code! My output for the first is: {'scATAC'} {'H8_ASPC', 'H7_ASPC', 'H3_ADP', 'H4_ADP', 'H1_ADP', 'H6_ASPC', 'H2_ADP', 'H5_ADP', 'SWAT', 'H9_ADP'} dict_keys(['scATAC']) Now I understand how...