fereidoon27

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Could not find HHsearch database

@YiningWang2 Did you find a solution to this problem?

How to generate features.pkl when using mmseqs2

@YiningWang2 In AlphaFold, MSAs are built using jackhmmer and HHblits. To avoid the extensive data downloads and CPU processing, precomputed MSAs and the feature.pkl file can be used instead. Due...

About the test datasets

@xihongshilamu Did you find a solution to this problem? I have the same problem.

About the test datasets

@xihongshilamu Did you find a solution to this problem? I have the same problem.

how can I create the input features for my own dataset by running the py. file? Is it possible to simply the input to only sequence of the protein?

@FreshAirTonight In AlphaFold, MSAs are built using jackhmmer and HHblits. To avoid the extensive data downloads and CPU processing, precomputed MSAs and the feature.pkl file can be used instead. Due...