Weimin Feng
Weimin Feng
> Hello, this is the original test data we used. Our data is obtained through stereomics sequencing of BGI. [Testdata.txt](https://github.com/kharchenkolab/Baysor/files/7472070/Testdata.txt) Hello, I also test the data of BGI, can we...
Hi， Did you use the tif image as input data ？And whether it came out error？ ________________________________ 发件人: Jiajun Yao ***@***.***> 发送时间: 2021年11月9日 3:04 收件人: kharchenkolab/Baysor ***@***.***> 抄送: 冯炜敏(Weimin Feng)...
Hi@VPetukhov I'm sorry, our data has not been submitted at present, and maybe it can be shared later. I will get in touch with you when our data publish.
@VPetukhov Thank you very much for solving this problem.This is the config file [segmentation_log.log](https://github.com/kharchenkolab/Baysor/files/7560761/segmentation_log.log) and the first hundred rows of ```molecules_2.csv``` [molecules_2_100_rows.csv](https://github.com/kharchenkolab/Baysor/files/7560807/molecules_2_100_rows.csv) Also, our tif image is a gray image...
@VPetukhov Thank you very much for your advance. There are no coordinates in gray image becasue it is nucleic acid staining(ssDNA) image taken by microscope and joined together by ```ImageJ```.It...
It is impossible all cells have exactly the same size. Maybe I don't explain clearly. I mean our gray tif can match the coordinates in ```molecules_2.csv``` after registration. I don't...
> @fengweimin-maker You made a mistake. It is "signaling" Thanks!
it very nice of you replied me so soon，but I have no ```test.genes_vs_regions.rankings.feather```,I got the file ```test.cross_species.motifs_vs_regions.rankings.feather``` ```test.cross_species.regions_vs_motifs.rankings.feather ``` ```test.motifs_vs_regions.rankings.feather ``` ```test.motifs_vs_regions.scores.feather``` ```test.regions_vs_motifs.rankings.feather``` ```test.regions_vs_motifs.scores.feather``` May be I have something wrong...
It so nice of you reply me quick and your advance help me a lot. My test_build_database is running now and maybe need some time for giving out the gene...
ok，Thank you for your advance. According to your guidance，after adding the option of ``` -g "#[0-9]+$" \``` I got feather files：  the ```test.genes_vs_motifs.rankings.feather``` format:  and the```test.motifs_vs_genes.rankings.feather``` format: ...