fengli-eGen

Hi Charlotte, I may encounter a similar issue. But I wonder when you say "115 Gb of corrected data (< Q20)", did you refer to Pacbio reads.bam from ccs? https://ccs.how/faq/reads-bam

Cool! Thank you for replying, Charlotte. I wonder when you ran ccs, did you run it with min_passes>=3 and min_quality (Q) 20 (HiFi standards)? I'm trying to run CLR ccs...

Thanks Charlotte!