feiloo

## Bug/Feature ### Expected behavior and actual behavior Changing Conda.cacheDir in the config causes the workflow cache to miss (resumability to fail). We prefer that nextflow resumes and reuses the...

Running CalculateContamination on a certain WGS pileup raises the Exceptions below. The issue happens atleast with gatk 4.6.2 and gatk 4.4.0.0 from bioconda. We might not be able to provide...

The naming scheme for the "genome" field in the samplesheet is overly strict and forbids using paths containing a slash. It seems sensible to allow more locations than the current...