Fei Zhao

Wheat genome create index failed

4

Hi, I got the following error when creating the wheat genome index ``` Build index for the reference. Kmer length: 17, window size: 7 Reference file: 161010_Chinese_Spring_v1.0_pseudomolecules.fasta Output file: wheat_chromap_chipseq.index...

所有命令均不能使用，显示command not found

1

之前使用一直正常，前几天升级了最新版vs code token 之前都是设置好没有变过 但是目前所有命令都无法操作了，重新安装过插件后也不行。 不知道该从哪里入手解决。报错如图。  

翻译任务：[TCGAWorkflow：TCGA Workflow Analyze cancer genomics and epigenomics data using Bioconductor packages](https://www.bioconductor.org/packages/TCGAWorkflow/) (R package version 1.8.0) 源文件：BiocWorkflow_todo/03TCGAWorkflow_en.Rmd

bioc_workflow_05annotation

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翻译任务：[annotation：Genomic Annotation Resources](https://www.bioconductor.org/packages/annotation/) (R package version 1.8.0) 源文件：BiocWorkflow_todo/05annotation_en/*Rmd

翻译任务 [RnaSeqGeneEdgeRQL：Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline](https://www.bioconductor.org/packages/RnaSeqGeneEdgeRQL/) (R package version 1.8.0) 源文件 BiocWorkflow_todo/10RnaSeqGeneEdgeRQL_en.Rmd

bioc_workflow_09rnaEndToEnd

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翻译任务 [maEndToEnd：An end to end workflow for differential gene expression using Affymetrix microarrays](https://www.bioconductor.org/packages/maEndToEnd/) (R package version 2.4.0) 源文件 BiocWorkflow_todo/09rnaEndToEnd_en.Rmd

bioc_workflow_02simpleSingleCell

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翻译任务 [simpleSingleCell：A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor](https://www.bioconductor.org/help/workflows/simpleSingleCell/) (R package version 1.8.0) 源文件：BiocWorkflow_todo/02simpleSingleCell_en/*Rmd

[systemPipeR: NGS workflow and report generation environment](https://www.bioconductor.org/packages/systemPipeR/) (R package version 1.18.0) 源文件：BiocWorkflow_todo/04systemPipeR_en/*Rmd

翻译任务 [methylationArrayAnalysis： A cross-package Bioconductor workflow for analysing methylation array data](https://www.bioconductor.org/packages/methylationArrayAnalysis) (R package version 1.8.1) 源文件：BiocWorkflow_todo/06methylationArrayAnalysis_en.Rmd

翻译任务 [rnaseqDTU：RNA-seq workflow for differential transcript usage following Salmon quantification](https://bioconductor.org/packages/rnaseqDTU/) (R package version 1.4.0) 源文件 BiocWorkflow_todo/07rnaseqDTU_en.Rmd