Fengchao
Fengchao
@rolivella I can't find the new commit. Could you push it? Thanks, Fengchao
What if there are two phospho in the peptide? Thanks, Fengchao
Thank you so much for the prompt reply. I was not aware that there is a [MS:1003057|scan number](https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003057). Thanks for pointing it out. > What are the precise contexts you...
Hi @chambm , I am implementing the following because it makes senses and seems to be the most straightforward. Let me know if you have any suggestions or comments. >...
If I understand it correctly, https://peptideatlas.org/tmp/mzML1.1.0.html is also the mzML schema, but contains more info than this file https://github.com/HUPO-PSI/mzML/blob/master/schema/schema_1.1/mzML1.1.1.xsd. So, am I looking at the wrong file? Best, Fengchao
I think you can close this issue. Thank you again for answer my questions. Best, Fengchao
PTMProphet has some issues when there are fixed and variable modifications on the same site. To make it work, you need to do the following 1. Remove the fixed modifications...
This is tricky... I think TMT-Integrator can only analyze one modification at a time.... Best, Fengchao
> I ran as you suggested and with mod_tag: H(156.1151), C(213.13657), K(385.278), K(369.28302) . Everything worked except TMT-integrator. TMT-Integrator can only analyze one modification (one mass) at a time. >...
Set both fixed and variable modification on C will crash PTMProphet.... Best, Fengchao