Fengchao

It's ` Ubuntu 20.04.4 LTS (GNU/Linux 5.11.0-1028-aws aarch64)`. The CPU is Arm-based AWS Graviton2.

Currently, no. But we are working on it. Will be available soon. Best, Fengchao

No, it does not support diaPASEF. Best, Fengchao

Hi Weixian, How did you import DIA interact-*.pep.xml files to Skyline? As far as I know, Skyline does not support FragPipe's DIA interact files due to the `_rankX` suffix. BTW,...

I am using the latest Skyline-daily too. But still get the same error as the one from long time ago: ``` --------------------------- Skyline-daily --------------------------- ERROR: No spectra were found for...

OK, it looks like when using `raw` files in FragPipe, the DIA `interact-*.pep.xml` can be imported to Skyline because Skyline looks for `_uncalibrated.mgf` files. While using `mzML` files, there are...

After exchanging some conversation with Nick here (https://skyline.ms/announcements/home/support/thread.view?rowId=54110), most puzzles have been solved. First of all, Skyline looks for `peptideprophet_summary` to decide if using probability as the threshold. Since that...

Hi Stephan, Thanks for your interest in our tools. Unfortunately, we don't have this functionality. You may uncheck normalization for now. Best, Fengchao

Hi Janos, Your log file shows that the job crashed due to an error. Can you double check if you sent the correct log file? Best, Fengchao

Thanks for your log file. First of all, please upgrade Philosopher to the latest version in case it is due to a bug that has been fixed. Second, IonQuant complained...