Fengchao
Fengchao
I will let Kevin @yangkl96 answer the Koina question. Best, Fengchao
It can. I think MSBooster will strip the PTMs that the model doesn't support and shift the peaks after getting the predicted spectra. Best, Fengchao
It is one of the feature we are going to add in the near future. If everything goes well, it should be ready by the end of this year. Stay...
Hi Paul, FragPipe currently replies on Philosopher to 1) extract TMT channel intensities from MS2; and 2) extract MS1 intensity. However, Philosopher cannot read .d format or perform 4-D feature...
Hi Paul, Thanks for the info. It will largely reduce the CPU time and memory requirements of the 4-D feature detection. It would be great if you could share some...
Sounds great! Here is the link: https://www.dropbox.com/request/VPQzvEtK8aU4t9CjwfDp Thanks, Fengchao
The support for the timsTOF TMT is still under development. Best, Fengchao
We have a pre-released version that supports it. Contact `yufeATumich.edu` (replace `AT` with `@`) if you want to test the new version. Best, Fengchao
> This code path in v20 ignores the original LCMS file and just writes out data from the mzBIN file. Yes, that is on purpose. I see that your input...
Hi Tobi, I reproduced your observations. Furthermore, I found that using the *.pepXML file (the one without `interact-` as prefix), Skyline recognized it from X!Tandem, which is OK since MSFragger...