pavian
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fbreitwieser
🌈 Interactive analysis of metagenomics data
Hey guys, Thank you for the great tool. I was using the tool to look over some kraken2 results and was unsure what the Clade counts vs Taxon counts meant....
Dear pavian support team, I am wondering that what is the rule to select which top 15 or 25 taxa per rank is shown on the sankey plot? According to...
When changing the sort order or adding/removing row from the "Results Overview" Table extra percent characters are added. For example, when loading the dataset I see the expected output, but...
Thank you for a great tool! Is Pavian dependent on NCBI taxonomy (taxdump files from NCBI)? If not, is it possible to use GTDB taxdump files available at the Struo2...
Hi, I have installed Pavian to visualise metagenomic data. When running Pavian in R with pavian::runApp(port=5000), the following is prompted: `Loading required package: shiny Listening on http://127.0.0.1:5000 The `name` provided...
Hello I have a bam and bam.bai file that contains over 1,000 reference genomes that I would like to upload for viewing the alignments, however I get this error: Warning:...
I see that not all species in kraken2 report are being added into pavian html. Can you tell me what is the criteria of selection in pavian? and any way...
Greetings, I am using Pavian to get a taxa counts table from a Kraken2 annotation to make some diversity analysis on R. I also made some kronagrams with the same...
When I upload kreport from kraken, some samples have nodes that are off the screen below the legend bar and I can't seem to pull them up to be visible....
Is there a way to increase the upload size when using the Docker image? Sorry if I'm missing something obvious, but the instructions in the readme don't seem to apply...
