Frank Bergmann

Results 23 issues of Frank Bergmann

Trying to upgrade to the latest version of expat using MSVC 2022, I find it impossible to link against expat, when compiled with the static runtime options. Here my cmake...

question
compilation
windows

Hello, i've followed the setup procedure, and was able to run the notebook example, just as described in: I was now hoping to get a plot for the parameter estimation...

PEtab
visualization
documentation

During HARMONY we noticed, that the conversion of SBGN file to SBML with layout / render is currently not working in the deployed newteditor. Error messages come from the minerva...

we've been made aware that `setup.py install --record plist.txt` is incomplete and missing the following files: %%PYTHON_SITELIBDIR%%/libsbml/__init__.py %%PYTHON_SITELIBDIR%%/libsbml/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/libsbml/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc not yet sure how to solve this, so filing it here...

bug
help wanted

As @alessandrofelder found out, the python bindings won't compile with swig 3.x on c++17, as it uses the removed unexpected_handler.

documentation

the nightly build failure is again due to the R headers are not in the path located. I assume that the build environment has been updated again. We should do...

The macos-latest enviroment does not include the R interpreter, as such the builds fail. we could just disable the R option for now.

On SBML-discuss we had the question on how to retrieve the resources, and it seems like we don't have an example for that in libSBML. I've sent some code to...

in SBGN PD the 'source and sink' element was renamed to 'emptyset'. This change is not propagated to SBGNML and libSBGN. Instead the existing 'source and sink' needs to be...

enhancement

Irina was noting that the maven build on her machine failed with: ``` vn install [INFO] Scanning for projects... [INFO] [INFO] ---------------------< com.github.libsbgn:libsbgn >--------------------- [INFO] Building libSBGN 0.3-SNAPSHOT [INFO] --------------------------------[...

bug
help wanted
dependencies