Frank Bergmann

Could you try manually changing the step number of the time course task before calling get_simulation_results, and see if that gives you the results you want: ```python set_task_settings(T.TIME_COURSE, settings={'problem': {'StepNumber':...

I never considered a use case where you would run it continuously with only changing the flags. when you run with `values_only=True` the time course settings are changed such that...

release 0.70 now restores the time course settings, resulting in the runs being repeatable.

as it turns out, CDataModel::findObjectByDisplayName does not return a flux reference in those cases. This needs to be fixed in the main COPASI repo, until then I can add a...

Are you running `run_time_course_with_output(['Time', '[Time]'])` that succeeds here. since the error message comes from `__build_result_from_ts` the time series object is being used, that one will have the species name without...

@CodeByDrescher I've released 0.76 that avoids this issue: * basico will no longer try to set the index, and instead issue a warning `Duplicate column names in time series consider...

this has been resolved

I checked the code and it was not changed in the last 5 years since this issue was opened. I'm not sure how urgent it would be. Here is the...

thank you for letting us know. We can definitely add a package config file in the next version. To provide you the information right now, so you can fix it...

We have quite a number of examples that would show you how to use libSBML from R. They show how to go through the model and interrogate it, or create...