fanninpm

@key262yek In CPython, `-c` and `-m` are ["interface options"](https://docs.python.org/3/using/cmdline.html#interface-options), and once the interpreter encounters an interface option, it parses that argument, _dumps the rest of the command_ into `sys.argv[1:]`, and...

@key262yek Perhaps what is needed in this case is the [`allow_hyphen_values` method](https://docs.rs/clap/3.2.12/clap/builder/struct.Arg.html#method.allow_hyphen_values).

Augur v18.0.0 was released not too long ago, and it adds the `--use-fft` flag to `augur refine`. Using this flag cut down `augur refine`'s computational time considerably (from 57 minutes...

Here's my build file, in case you want to reproduce this: my_profiles/test-data.yml ```yaml inputs: - name: reference_data metadata: https://data.nextstrain.org/files/ncov/open/metadata.tsv.gz aligned: https://data.nextstrain.org/files/ncov/open/aligned.fasta.xz # GenBank data includes "Wuhan-Hu-1/2019" which we use as...

> There were a few versions of nextstrain/base container (and ncov-ingest derived from it) which used musl flavor temporarily. It performed poorly. We switched nextstrain/base back to gnu. But ingest...

I tested a slightly modified version of the new rule in that PR (the only modification is piping the alignment via stdout to the `xz` command, instead of dumping the...

The only maintainer of the @actions-rs organization, @svartalf, has been known to take protracted absences from the internet. Feel free to fork the project in @svartalf's absence.

`cargo install rustup`

@lucifer1004 Like I said, `cargo install rustup`.

You could also use [`csv.Sniffer.sniff()`](https://docs.python.org/3/library/csv.html#csv.Sniffer.sniff) to return a `Dialect`, which can be passed in to `pandas.read_csv()` as the `dialect` keyword argument.