Fabio Ticconi

Hi, There's not too much to say I'm afraid :) but I'll try to clarify my position. One of the public pipelines actually doing lineage analysis is Immcantation, but I...

Thanks a lot for your answer - and I'll be very glad to beta-test it on our data. For forests, I think it would be awesome to have a network...

One first step I'm currently doing, is move from "clones" as defined, for example, by a mixcr pipeline, to "clonal groups" (from which you could then further build lineage trees)....

For sure, thank you @tsvvas.

Hi @AnnaVyborova, you need to upgrade to a newer immunarch release to solve it :) most recommended is, generally, the latest (or even the developer version).

I'm not sure if this question is too OT here, but: does immunarch use the classic Morisita Overlap or the one with Horn's correction? In my experience/readings, Morisita-horn tends to...

Hi, it seems like, maybe, the above change has broken my ability to use the mixcr format. I have some weird requirements, and until recently (I was using 0.6.4 I...

Thanks @Alexander230 - it works like a charm, will let you know is any other issue arises ;)

Ah, regarding `raref` I got it.. it's the normalisation step. To be honest it's not really clear to me what kind of normalisation is being performed and why. Can this...

Sorry for reviving an old issue, but this is concerning. @tiagochst did you get a further update from them? were the inconsistencies fixed?