ewoutcrombez

Hello, I tried running Canu using the command `canu -p Canu -d ../results/Canu genomeSize=158m corOutCoverage=200 correctedErrorRate=0.15 -nanopore reads.fastq.gz` on a slurm grid cluster, but got this "abnormal" error: ``` ERROR:...

Advice on variant calling against haplotype-resolved reference

2

Hello, I have a haplotype-resolved reference genome that is ancestral to the samples that I want to call variants for. I was wondering if you have any advice on how...

Diploid and tetraploid samples

9

Hello, I have a diploid and synthetic autotetraploid plant with a haploid genome size of approximately 150 Mb. We know what the ploidy levels are of these samples (as the...