Eric Weitz
Most chimpanzee centromeres that are acrocentric appear telocentric in Ideogram.js. Specifically, chimpanzee chromosomes 13, 14, 15, and 22 are acrocentric like their human orthologs, but appear telocentric like mouse chromosomes....
Support labeling for features like genes or small variants. For example, in an ideogram with a basic annotation showing the location of gene BRCA1, add an option to display the...
Add support for perpendicular band labels, e.g. in horizontally-oriented chromosomes.
This splices transcripts _smoothly_, letting users track where exons, introns and UTRs end up, and their relative size change. By having a brief, gradual change rather than an instant change,...
The h5wasm and jsfive libraries look valuable for processing HDF5 files in web browsers. Thanks for making them available! ### Use case I want to read large HDF5 files in...
This removes a defunct UI test suite. That reduces engineering distractions while retaining product quality. ### Background Previously, before 2020, we mainly used a Selenium WebDriver Rails UI test suite...
This implements basic upload and visualization of ATAC fragment files, which enables multiome exploration. ### Overview [Previously](https://github.com/broadinstitute/single_cell_portal_core/pull/646), SCP only supported viewing BAM files in its igv.js genome browser embed. This...
This lets users see how their searched gene interacts in cell circuits, and overlays expression data on pathway diagrams. https://github.com/user-attachments/assets/1ae1d565-6f7d-4e18-aa1f-a1980d583b40 ### Impact Previously, users got a brief text summary of...
There seems to be a naming bug in code and reference documentation for violin plots. What is referred to as "Silverman's rule of thumb" seems to actually be "Scott's rule...