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evolutionaryscale
Hello everybody! today i'm trying to test ESM-C but i'm having an hard time due to different problems: - tokenizer initialization need ESM3 agreement. solved by doing login on huggingface...
I am currently trying to obtain residue embeddings for protein sequences. The typical workflow involves the following steps: ``` protein = ESMProtein(sequence=sequence) protein_tensor = self.model.encode(protein) config = SamplingConfig(return_per_residue_embeddings=True) output =...
 This mean before you install ESM C， must install ESM 3
Initializing `TokenizerCollection` in ESM-C models requires access to ESM3, even if not using the weights or non-sequence tokenizers. This is the simplest fix which does not affect `TokenizerCollection`. https://github.com/evolutionaryscale/esm/issues/155
When running the following snippet from the README to use ESMC 6B: ```python from esm.sdk.forge import ESM3ForgeInferenceClient from esm.sdk.api import ESMProtein, LogitsConfig # Apply for forge access and get an...
I’m using a pre-trained model `esm3-sm-open-v1` to extract residue embeddings via [link](https://github.com/evolutionaryscale/esm/issues/2#issuecomment-2189701682). However, the precision of my model is unexpectedly low. For reference, here’s a small snippet of the residue...
Hi there, I want return attention weight like esm2 from the latest esm-c, but it seems this feature is unavailable for local usage or through the API server.
Hello, I really appreciate this amazing work. The problem I face is the models are a bit large to run on limited hardware. My question is, is it possible to...
helllo: i have a fasta sequence of a protein, how can i input the sequence into esm3 and get the embedding and pdb file, is there any example code of...
We are currently using inverse folding in ESM3. When we increase the temperature from moderate 0.5 to 2 or 3, we see a wide range of sequence variation, which is...
