Everton Souto Lima

Thank you for your response. I understand it is not a server. I am trying to set it up with Jena fuseki, using a docket environment I had found (https://hub.docker.com/r/stain/jena-fuseki/)...

Thank you. Updating it to node 8 solved the issue. However, I get a different issue. ``` root@0c81d86e0603:/home/solid-cli# solid-bearer-token "$IDP" "$USERNAME" "$PASSWORD" "$URL" { FetchError: request to https://solid:8443/.well-known/openid-configuration failed, reason:...

Have you checked your sample data, before adding it to the phyloseq object? If I am not mistaken, samples for which the metadata is not present in will get removed...

I don't believe checking the taxa table is necessary. In any case, you can do so by getting the taxa from your phyloseq object and comparing your raw input (seqtab.nochim)....