Ethan Blackwood

Make all text in the app translatable

7

We want to factor out any and all strings in the interface into localization structures (like the one in `src/localization/en.js`) in order to let the whole app be translated into...

# Description The issue is that the `rois.com` function always assumes that each column of `A` is in F-order, but `get_contours` was not taking that into account when calling it...

Fix removeBL for 3D movies

8

# Description This PR is mainly focused on making sure `local_correlations_movie` works for 3D movies, by adding an `is3D` flag for passing to `caiman.load` and also slightly modifying `movie.removeBL`. I...

Make Keras 2 available for TensorFlow 2.16.1

5

# Description This provides a way to continue using Keras 2 with TensorFlow 2.16.1 (see #1355) by following the instructions here: https://github.com/tensorflow/tensorflow/releases/tag/v2.16.1 While sticking with 2.15.0 should still work for...

Don't filter out NaNs for contours

13

Fixes #308. @kushalkolar I believe we decided to go ahead with removing the line that filters out NaNs, but not change how centers of mass are calculated here (except for...

Add async_local backend and allow using an existing dview for local and async_local backends

5

This is a feature I added for myself, and I think it may be useful for others so I'm offering it here. **Problem**: mesmerize is currently inflexible with regard to...

Fix motion correction and CNMF for 3D movies

4

The mcorr algorithm currently fails when run on a 3D movie during correlation image calculation. This is due to some code in caiman that could probably also be changed to...

Just want to bring up this part of the code in `get_shifts`: https://github.com/nel-lab/mesmerize-core/blob/6f46b98bfee8daf3078fa0b72e90909180feed61/mesmerize_core/caiman_extensions/mcorr.py#L115-L123 My understanding is that `shifts` has a shape of `(n_dims, n_frames, n_patches)`. This code flattens that to...

Use Path.resolve() consistently to prevent UNC/drive letter ambiguity

3

This fixes an issue I had on Windows where pathlib reported that one or more output paths in CNMF did not have a common root with the output dir. This...

I am having the following error when calling `viz.show()` after creating a mesmerize-viz container with a CNMF run with at least 1 empty contour: ``` thread '' panicked at src/conv.rs:1182:30:...