Eser Aygün

Sorry for the lack of documentation. I should improve it sometime. Global sequence alignment uses Needleman-Wunsch algorithm. Local sequence alignment uses Smith-Waterman algorithm. About your blockers: * It does give...

Both GlobalSequenceAligner and StrictGlobalSequenceAligner use Needleman-Wunsch. GlobalSequenceAligner is modified to not include the initial and terminal gaps in the result. This is a common practice in bioinformatics. It is sometimes...

I see your problem. I guess you're right. Vocabulary is not ideal in cases where you cannot simply enumerate all possible elements. I'm pretty much convinced that an interface that...

Not soon, sorry. But feel free to fork or contribute.