Eric Tu

Hi Leonis, I believe this is an issue with loading bams from hdfs, which is why there's a warning provided `16/03/17 09:11:04 INFO VizReads: WARNING: No reads file provided WARNING:...

Hey @xubo245 ! Let me see how I can help. Is there an additional stack trace in your browser?

Hey @xubo245, what is your setup for running mango? Are you running it on a local machine, or running it on a cluster (with flag `--master yarn-client`)? If you're running...

Because of nested schemas, perhaps use Dataframes

created this issue in https://github.com/bigdatagenomics/utils/issues/65

Issue is related to parquet filtering. Not providing a parquet predicate works fine

Issue is with incorrect Parquet FilterPredicate. NucleotideContigFragment has no length or end field, which does not allow the predicate to be specified correctly. Will be fixed by https://github.com/bigdatagenomics/bdg-formats/pull/61 and corresponding...

Will be resolved by bigdatagenomics/bdg-formats/#71 and corresponding changes to adam