Eric Kerfoot

Rename `Transpose` to `Permute` to Reflect Behaviour

3

**Is your feature request related to a problem? Please describe.** The `Transpose` and `Transposed` transforms actually permute based on the axes given to them, they don't just swap dimensions 0...

**Describe the bug** The default collate function fails when using a `BatchSampler` because datasets given lists of indices or slices return `Subset` instances from `__getitem__`. This doesn't appear to be...

**Is your feature request related to a problem? Please describe.** The included Conda specification file `environment-dev.yml` is very slow to resolve packages, taking 12 minutes on a reasonably modern workstation...

Sometimes when executing compiled code using multiprocessing a system error occurs like this on Ubtun 14.04 (and possibly other Linux distros/versions) with Anaconda Python 2.7: Inconsistency detected by ld.so: dl-open.c:...

Expanded Discussion of Tensor Type/Format/Modality in Bundle Definition

3

I have proposed some additions to how model input and output tensors are specified in PR https://github.com/Project-MONAI/MONAI/pull/4047. The idea is that the type of a tensor states if it's an...

Bundle Download Large Files

3

**Is your feature request related to a problem? Please describe.** Many bundles have the `large_file.yml` file specifying large files (specifically pre-trained weights). The bundles in the GenerativeModels repo are kept...

Use Multiple Bundle Config Files With Inference/Training

3

**Is your feature request related to a problem? Please describe.** One of the best practice concepts we're documenting with bundles is having a config file with common definitions used by...

Adding metadata schema to the code base itself

7

Fixes #7303 #6959. ### Description This adds the schema file into the code base (but this maybe should be elsewhere). The changes implement a number of new things: * Moved...

**Describe the bug** `BaseException` is being caught in places and it's not clear this should be done or is appropriate. Bugbear is not complaining about it as B036 as shown...

See Issue https://github.com/Project-MONAI/MONAI/issues/6626 relating to memory management and interaction with the garbage collector. One solution that we've tried before and had success with was to use the `GarbageCollector` handler to...