ericolo

For more info, here's the log file from that run: [debug_log.txt](https://github.com/user-attachments/files/17467245/debug_log.txt) And here is the complete error message: [error.txt](https://github.com/user-attachments/files/17467247/error.txt) Thanks !

Thanks, I think I'll just proceed only with species containing 15 genomes or more Because it works with other species that also have 2 genomes only I thought there was...

Hello, Sorry for the very little info, this is the log file obtained on that run: [debug_log.txt](https://github.com/user-attachments/files/17467207/debug_log.txt) And here is the complete error message: [error.txt](https://github.com/user-attachments/files/17467221/error.txt) Thanks !

Indeed if I remove one genome from the list it works fine, haven't tried the chunk_size yet.

So I tested two cases and it did replicate, it ended up hanging, and it is not a problem of memory usage... so I think there's indeed no workaround Here's...

I tried running all the hanging ones without my custom clustering file and for some it works, for others it still hangs... so it's not a strict rule, I can...

Nope no fix on my side, I just went back to `geom_jitter` and `geom_boxplot`