Eric Bonnet

Add new executor to nextflow: Bridge (see issue #3094).

New feature: bridge executor

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## New feature Hi nextflow community. I'd like to propose a new feature for nextflow: a new executor based on the "bridge" scheduler. Bridge is an abstraction layer to ease...

FindMultiModalNeighbors ComputeSNN std::bad_alloc error

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Hi Seurat devs, I'm trying to analyze CITE-seq (RNA+ADT) data on a rather large dataset, but I'm having a memory error message when trying to compute the WNN graph. here...

hicPCA " invalid literal" error message

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Hi everyone, I'm trying to use the hicPCA command but I get an error message: ``` $ hicPCA -m mat_160K_corrected.cool --outputFileName pca1.bw pca2.bw pca3.bw --format bigwig Traceback (most recent call...

Hi, I have an error message while trying to convert contacts pairs to cool format with the command ``` pore_c contacts export sample1.contacts cooler sample1 --fragment-table vd.fragment.parquet --chromsizes chrom_hg19.sizes ```...

multi-way contacts file

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Hi, I was wondering if the multi-way contacts derived from the alignment file are stored in a dedicated file and if yes which one ? The "alignments.parquet" file contains only...

conda environment error

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Hi, I have an error while trying to run the hic pipeline on the test data with the conda environment. Looks like a python module is missing. Thanks for your...