Elizabeth Purdom
Elizabeth Purdom
I agree we should wait. Perhaps they just have different defaults that we need to align… > On Apr 13, 2018, at 10:10 PM, Davide Risso wrote: > > Perhaps...
I have now changed the code to only run the function called by user, so may make the problem not as easy to detect. But still useful to track down.
No, this is a warning from limma from getBestFeatures called by mergeClusters. It happens in the first call to mergeClusters in the vignette during the ebayes call. When I set...
I mean per gene scaling, so the observed variance per gene is 1 for all genes; basically a scale() command. The idea that if you work not on dim. reduced...
Note this requires using distance -- need option to allow user to give dist.
This is something to do with how aheatmap treats ordered factors. If the factor is not ordered, the spaces are okay: anno = factor(sample.int(3, size = 10, replace = TRUE),...
I have added a sensible error message to plotHeatmap and submitted the issue to NMF: renozao/NMF#83
No longer sure how to replicate this problem!
Fanny, I'm sorry I left this hanging. If you can stretch your memory back, what do you mean it doesn't work great? Do you get an error? Or just that...
Can you provide the full code and the traceback of the error?