SINA
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SINA - Reference based multiple sequence alignment
I often get an MSA output where at least one sequence is 1bp longer then the other sequences in the alignment. Other software expect an alignment of equal length. Can...
The installation from Bioconda seems to work. But when running Sina I get this error: ```bash (sina) $ sina --help sina: error while loading shared libraries: libtbb.so.2: cannot open shared...
I am using the SINA 1.7.2 for aligning and searching taxonomy of fasta sequences (550bp, about 5000 sequences). However the processes always terminated with getting the 'Signal 11' error. Even...
Running `sina -h` produces: ``` /ebio/abt3_projects/software/dev/mdy/bin/cf-amplicon/.snakemake/conda/6546893098ee2fcb85e1d84f030c804c/lib/sina/bin/sina.real: error while loading shared libraries: libboost_program_options.so.1.54.0: cannot open shared object file: No such file or directory ``` conda env, which contains `sina 1.3.0` and...
If I run `sina` within a docker container (I've tried `quay.io/biocontainers/sina:1.7.1--h9aa86b4_0` and creating my own container; see below), I get the error: ``` 02:38:59 [SINA] This is SINA 1.7.2. 02:38:59...
Although the index for database is built and exists in the same directory with the database file, Sina throws the error of 'Failed to load "path/to/index" - rebuilding'
Trying to compile and install v1.7.2 on Debian 10 I encountered problems with the documentation which I could not quickly solve. I had troubles with make install, which complained that...
Compiling from sources on Debian 10 presents the following issue: libraries are not specified on the linked command line (error adding symbols: DSO missing from command line), which can be...
SINA does not compile against the recently released arb 7.0. There is a change in the API which can be fixed by the following patch (using the new recommended version...
Hello, I keep running into ``` /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -DBOOST_TEST_DYN_LINK -DBOOST_TEST_MAIN -pthread -I/usr/include -I/usr/lib/arb/INCLUDE -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -g -O2 -fdebug-prefix-map=/home/moeller/tmp/sina=. -fstack-protector-strong -Wformat -Werror=format-security...
