serofoi

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Change minimum required version of rstan

8

Please place an "x" in all the boxes that apply --------------------------------------------- - [ ] I have the most recent version of linelist and R - [x] I have found a...

davidsantiagoquevedo

Priors functions

4

zmcucunuba

refactor prepare_serodata

2

At the moment, `prepare_serodata` only produces `age_mean_f` and adds some columns such as binomial confidence intervals. They could remain. But perhaps we don't need the `sample_size` column, which simply calculates...

zmcucunuba

Restructuring inference methods

2

First, we set up the data: ```r data(chagas2012) serodata

ben18785

Creating functionality for time and age varying model.

1

We will consider a simplified case where the age and time specific FOI $\lambda=\lambda(a, t)$ is a product of an age-specific pattern and one that varies by time, $\lambda(a, t)=u(a)...

sumalibajaj

Changes to `generate_sim_data`

2

Sorry @ntorresd -- I'm revisiting this one as I've genuinely found it hard to use this function. To give an example, I am trying to replace the reliance on the...

ben18785

* **Please check if the PR fulfills these requirements** - [x] I have read the CONTRIBUTING guidelines - [x] A new item has been added to `NEWS.md` - [x] Tests...

rccreswell

* **Please check if the PR fulfills these requirements** - [ ] I have read the CONTRIBUTING guidelines - [ ] A new item has been added to `NEWS.md` -...

ntorresd

Dev version

1

* **Please check if the PR fulfills these requirements** - [ ] I have read the CONTRIBUTING guidelines - [ ] A new item has been added to `NEWS.md` -...

ntorresd

Hmisc is one of the heaviest dependencies of serofoi, yet it is used only once, and for a relatively simple task.  In general, *misc packages do not make good...

Bisaloo