serofoi
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add fit_seromodel_optimization function
- Please check if the PR fulfills these requirements
- [x] I have read the CONTRIBUTING guidelines
- [x] A new item has been added to
NEWS.md
- [x] Tests for the changes have been added (for bug fixes / features)
- [x] Docs have been added / updated (for bug fixes / features)
- [x] Checks have been run locally and pass
- What kind of change does this PR introduce? (Bug fix, feature, docs update, ...)
Preliminary work on allowing optimization in addition to MCMC sampling.
- What is the current behavior? (You can also link to an open issue here)
Users can infer parameters by MCMC sampling. (See https://github.com/epiverse-trace/serofoi/issues/63, https://github.com/epiverse-trace/serofoi/issues/73 ).
- What is the new behavior (if this is a feature change)?
Users can find best fit parameters via rstan::optimizing.
- Does this PR introduce a breaking change? (What changes might users need to make in their application due to this PR?)
Should not.
- Other information:
Replaces #170