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Published 20 hours ago • verified publisher icon epigen

Leveraging pypiper ngstk

Open vreuter opened this issue 6 years ago • 1 comments

atacseq.py and chipseq.py should use functions from pypiper.ngstk. Specifically, this is in regard to bam_to_bigwig / bamToBigWig (though it may also apply to other pipeline-defined functions). At least from quick look over the version in chipseq.py, it seems like the only real difference is a hook for normalization factor. These functions should use a central version from ngstk once it parameterizes that. https://github.com/epigen/pypiper/issues/52

vreuter avatar Sep 28 '17 20:09 vreuter