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sambamba command not called as defined in the tools section of the atacseq.yaml pipeline file when generating oracle_FRiP using sambamba view

Open cschmidl opened this issue 4 years ago • 0 comments

After macs2 sambamba is called as defined in atacseq.yaml, but the nex sambamba view command is simply calling "sambamba":

macs2 callpeak -t .... sambamba-0.7.1 depth region -t .... sambamba view -t ....

cschmidl avatar Jun 04 '20 06:06 cschmidl