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National and subnational estimates of the time-varying reproduction number for Covid-19

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At the moment code is split over two repositories and data is embedded in both (in the form of set up lists, configs, and results etc). From a reproducibility and...

enhancement

Ideally the documentation should be self generating as new datasets are added but failing that we need to update to reflect currently supported geographies.

bug

None of the national estimates has been produced for three days. Is there a log somewhere that would flag this up and report the error?

enhancement

Currently data sourcing, the generation time, and reporting delays are passed in during the function call. These would all be better as objects in the dataset list as this would...

enhancement