Epiforecasts
Epiforecasts
covid
Temporal variation in transmission during the COVID-19 outbreak
EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
covid-rt-estimates
National and subnational estimates of the time-varying reproduction number for Covid-19
covidregionaldata
An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisatio...
EpiNow
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
NCoVUtils
Utility functions for the 2019-NCoV outbreak
omicron-sgtf-forecast
In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence for changes in transmission advantage over time for the Omicro...
scoringutils
Utilities for Scoring and Assessing Predictions
socialmixr
R package for deriving social mixing matrices from survey data.
inc2prev
Estimate epidemiological quantities from repeated cross-sectional prevalence measurements