Epiforecasts

Results 11 repositories owned by Epiforecasts

covid

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Temporal variation in transmission during the COVID-19 outbreak

EpiNow2

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Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

covid-rt-estimates

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National and subnational estimates of the time-varying reproduction number for Covid-19

covidregionaldata

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An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisatio...

EpiNow

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Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

NCoVUtils

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Utility functions for the 2019-NCoV outbreak

omicron-sgtf-forecast

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In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence for changes in transmission advantage over time for the Omicro...

scoringutils

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Utilities for Scoring and Assessing Predictions

socialmixr

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R package for deriving social mixing matrices from survey data.

inc2prev

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Estimate epidemiological quantities from repeated cross-sectional prevalence measurements