NCoVUtils
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epiforecasts
Utility functions for the 2019-NCoV outbreak
I think it makes sense to expand to more datasets now. There has been interest in the following: - [ ] Burkina Faso - [ ] Irak - [ ]...
match the latest tagged version. Ensure that people have the latest version - the change to get_ecdc_cases from 2018 to 2019 is causing bugs to pop up where some are...
https://github.com/epiforecasts/NCoVUtils/blob/191baed9a05a8be463505e8c2c40e30c20cacfd9/tests/testthat/test-get_ecdc_cases.R#L16 I think this was upgraded to 2019 in https://github.com/epiforecasts/NCoVUtils/commit/085f7e8fcd8f6082583483ec6b9002530a8b50c9#diff-c3dfb83338f4821ca49905e9526533c1 but the test was missed out. https://travis-ci.com/github/epiforecasts/NCoVUtils/builds/175702142 "> test_check("NCoVUtils") ── 1. Failure: get_ecdc_cases data source is unchanged (@test-get_ecdc_cases.R#1 expected_colname %in%...
The New York Times csv files does not put a FIPS for New York City (because they aggregate all associated counties into New York City metro). Suggest post process and...
It looks like the yaml files [`get_france_regional_cases()`](https://github.com/epiforecasts/NCoVUtils/blob/master/R/get_france_regional_cases.R) reads from are no longer being updated so we need another data source. The[ opencovid19-fr github has a csv](https://github.com/opencovid19-fr/data/blob/master/dist/chiffres-cles.csv) compiling data for regions...
We should work on a standardized interface for subnational data, i.e. a wrapper function that takes `country` as an argument and calls the respective function. Linked to standardizing the data...
Currently, many regional case count datasets are being returned from the package without clear reference to an existing geographic dataset. This means that users need to do some name matching...
The current name is not good (esp the random V). Is there a good way to change a package name beyond copying the repo, changing the name and then redirecting...
At the moment the cache is automatically deployed to the directory in which function are run. This is not good practice as the user should have a say in any...