EpiNow2

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I think there are a couple of mistakes in the implementation of the `zero_threshold` for smoothing zeros in the reported case time series when the average of the preceding week's...

LloydChapman

epinow: no non-missing arguments to max; returning -Inf - max

1

Hello, I am learning this EpiNow2 to forecast using my own data. I have input my data with two columns (dates and No.Cases). ``` reported_cases

furqan915

This is a trial balloon for a PR. My personal use case for EpiNow2 works with @hamishgibbs RtD3 framework using just the CSVs generated by `regional_summary`. I delete the generated...

RichardMN

Integrating the vaccinated Population

2

This is definitely not a 'bug' or 'issue' but more of a discussion (but I did not find a discussion string anywhere, my apologies if there is one), but how...

krageth

Interface unification with `epinow2()` wrapper function?

2

Both `epinow()` and `epinow_regional()` take common arguments, except for the `region` column in the `reported_cases` and the two extra `epinow_regional()`'s arguments (`non_zero_points` and `summary_args`) that can be ignored by `epinow()`....

hsbadr

Add to external use case vignette: https://peerj.com/articles/14119/

seabbs

start on static delays

1

Picks out the new features in https://github.com/epiforecasts/EpiNow2/pull/308 relating to static delays. Creating this as draft PR as it seems unfinished.

sbfnk

Picks out the new features in #308 relating to the secondary model.

sbfnk

Fit to multiple time series and fold in secondary model

1

It might be nice to add functionality to have multiple observation time series assuming that they are all reported from the same infection proces with a delay and scale. This...

sbfnk

Remove {styler} dependency

2

Hi, author of the formatting package {styler} here. As I judge from a search in your source code, there is no functionality that uses {styler}, in other words {styler} is...

lorenzwalthert